Your Gut Isn’t the Only Microbiome Affecting Your Anxiety—Meet Your Mouth

Masthead Image
A Person Wearing Latex Gloves Checking a Woman's Teeth
Author Name: Beth Rush
Date: Friday June 6, 2025

Body + Mind is reader-supported. We may earn an affiliate commission when you buy through some of the links on our site. 

Conversations about the link between mental health and microbiomes usually focus on the gut. The oral microbiome is often overlooked, but it plays a surprisingly important role in how your brain processes stress, anxiety and even depression. Understanding how oral health impacts mental health is crucial to taking proactive steps toward overall well-being. 

The Mouth-Brain Connection

Your mouth is home to 6 billion bacteria — both good and bad. Under the right conditions, this oral ecosystem helps with digestion, supports your immune system and keeps inflammation under control. However, when it’s out of balance — usually due to poor oral hygiene, chronic stress, high sugar intake or smoking — harmful bacteria can multiply. This bad bacteria can trigger systemic inflammation, leak into your bloodstream and even travel along the cranial nerves to your brain. 

Researchers are finding increasing evidence linking oral microbiome imbalances to elevated cortisol levels, increased inflammation in the brain and a heightened stress response. This means that your mouth might be making your anxiety worse. 

This is a game-changer in understanding how oral health impacts mental health. It shifts the narrative from focusing solely on the gut-brain axis to a more complete picture that includes your teeth, tongue, gums and saliva. 

Signs Your Mouth-Brain Link May Be Out of Sync

The connection between oral health and mental health often begins with subtle physical symptoms. These signs can be early indicators that the oral microbiome is out of balance and may contribute to elevated stress or anxiety levels.

Common signs of oral microbiome imbalance include:

  • Chronic bad breath — or halitosis — even after brushing
  • Red, swollen or bleeding gums, especially when brushing or flossing
  • Persistent plaque buildup or tartar, which fuels bacterial overgrowth
  • Tooth sensitivity or decay despite routine care
  • Dry mouth, which limits saliva’s natural cleansing and protective functions
  • Frequent mouth ulcers or sores, signaling immune response dysfunction

When you ignore these symptoms, pathogenic bacteria — such as Porphyromonas — can thrive. This specific bacterium is linked to impaired memory and disorders like Alzheimer’s.

Additionally, oral inflammation can impact neurotransmitter systems, particularly those responsible for producing serotonin and dopamine. These are the same brain chemicals that influence mood, motivation and emotional stability. A disrupted oral microbiome can reduce the availability of these neurotransmitters, leaving the brain more reactive to stress and increasing the risk of anxiety and depressive symptoms. 

Simple Practices That Make a Difference

Caring for the oral microbiome is a foundational part of supporting emotional and neurological health. These everyday habits can help restore microbial balance in the mouth and reduce the inflammatory triggers contributing to anxiety and stress. 

1. Brush Twice Daily

Brushing in the morning and before bed removes plaque, food particles and harmful bacteria that can disrupt the oral microbiome. Use fluoride toothpaste and a soft-bristled toothbrush to clean thoroughly without damaging the gums or enamel. Brushing consistently keeps inflammation in check, reducing the chances of bacterial byproducts entering the bloodstream.

It’s also an opportunity to build healthy habits across generations. Children often imitate their parents, so when brushing is part of a visible, shared routine, they’re more likely to adopt it as a lifelong habit. Letting them experiment with different toothpaste flavors or choose their own toothbrush can make the process more fun and engaging while still laying the foundation for strong oral and mental health. 

2. Floss Every Day

The American Dental Association recommends flossing once a day, whether it’s first thing in the morning or before bed. Flossing removes debris and bacteria between teeth — areas a toothbrush can’t reach. Neglecting this step allows harmful microbes to thrive in tight spaces, leading to gum inflammation and microbiome imbalance. Daily flossing is one of the most effective ways to support oral and systemic health.

3. Avoid Harsh Mouthwashes

Many over-the-counter mouthwashes contain alcohol or strong antimicrobial agents that indiscriminately kill bacteria, including beneficial strains. This can weaken the oral microbiome over time. Instead, choose an alcohol-free, microbiome-friendly mouthwash that maintains balance without wiping out the good microbes.

4. Choose a Microbiome-Supporting Diet

A diet high in sugar and refined carbohydrates feeds harmful oral bacteria. Prioritize whole foods, leafy greens, fiber-rich vegetables and lean proteins. Crunchy, fibrous foods like carrots and apples can help mechanically clean teeth while supporting healthy bacteria. Staying hydrated promotes saliva production, essential for neutralizing acid and maintaining oral balance.

5. See a Dentist Regularly

Visit your dentist at least once every year for a checkup. Routine dental checkups are essential for spotting early signs of microbiome disruption, such as gum inflammation or plaque buildup. Professional cleanings help remove hardened tartar and allow the dentist to catch issues before they become chronic. Preventive care plays a direct role in protecting oral and mental well-being. 

A Healthier Mouth for a Calmer Mind

The connection between oral health and mental well-being is stronger than many realize. An imbalanced oral microbiome can quietly fuel systemic inflammation, disrupt neurotransmitter function and increase the body’s stress response — all of which contribute to anxiety. Understanding how oral health impacts mental health shifts the focus beyond just brushing for cavity prevention. 

Previous ArticleRice for Breakfast: 10 Tasty Asian Recipes for Weight Loss Next ArticleWhat to Eat After Your C-Section for Fast Recovery (And What to Avoid)
Subscribe CTA Image

Subscribers get even more tailored tips & deets delivered directly to their inboxes!